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image analysis software  (Carl Zeiss)


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    Structured Review

    Carl Zeiss image analysis software
    Image Analysis Software, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 93/100, based on 16 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/zen+3+0+software/ZEN+3%2E0+pro/pmc13013335-72-0-5
    Average 93 stars, based on 16 article reviews
    image analysis software - by Bioz Stars, 2026-09
    93/100 stars

    Images

    Related Articles

    Fluorescence:

    Article Title: Khdrbs1 drives re-differentiation of bipotential progenitor cells by inhibiting p53 in zebrafish biliary-mediated liver regeneration.
    Article Snippet: .. Quantification of liver size and Statistical analysis The area (μm2) of liver and intensity of fluorescence were measured with ZEN 3.0 software (Carl Zeiss). ..

    Software:

    Article Title: Khdrbs1 drives re-differentiation of bipotential progenitor cells by inhibiting p53 in zebrafish biliary-mediated liver regeneration.
    Article Snippet: .. Quantification of liver size and Statistical analysis The area (μm2) of liver and intensity of fluorescence were measured with ZEN 3.0 software (Carl Zeiss). ..

    Article Title: Identification of a protective antigen reveals the trade-off between iron acquisition and antigen exposure in a global fungal pathogen.
    Article Snippet: Developing vaccines for cryptococcosis has been a priority for the medical mycology community for decades.. One crucial step toward a successful multivalent vaccine is to identify multiple protective antigens.. Here, we identified one promising representative antigen Cig1, which is highly expressed in both infected mice and patients with cryptococcal meningitis due to iron limitation.

    Article Title: Regulation of podocyte surface proteins by the enzyme A Disintegrin And Metalloproteinase 10 (ADAM10).
    Article Snippet: PLAs were performed in 3 μm murine paraffin, or 8 μm 152 human kidney cryo-sections according to the minimally adapted Duo Link® PLA Fluorescence protocol 153 (Sigma-Aldrich). .. Immunofluorescence and PLAs were resolved by confocal microscopy with a 154 LSM800/980 microscope with Airyscan using ZEN 3.0 software (all ZEISS). .. 155 Statistical analyses 156 Jo urn al Pr e-p oo f 7 Statistical analyses were performed using the software GraphPad Prism.

    Article Title: Increased excitability of dentate gyrus mossy cells occurs early in life in the Tg2576 model of Alzheimer’s disease
    Article Snippet: After this period, slices were washed in TB and exposed to a series of glycerol dilutions (25, 40, 55, 70, 85 and 90%; Sigma-Aldrich), immediately mounted on a 0.1% gelatin-coated slide surrounded by agar (4%) support, coverslipped using a mounting media solution of 0.5% N-propyl gallate (Sigma-Aldrich) and 90% glycerol in ddH 2 O, and the edges were sealed (CoverGrip, Biotium). .. Photomicrographs were acquired with a Zeiss LSM 880 laser scanning confocal microscope and Zen 3.0 software (Zeiss), with Plan-Apochromat 10×/0.45 M27 and Plan-Apochromat 20×/0.8 M27 objectives (Zeiss). ..

    Article Title: GGA2-depletion in beta cells by Enteroviruses causes Golgi acidification, premature activation of cathepsins and alters the MHC class I immunopeptidome
    Article Snippet: .. Images were acquired with a LSM880 Airyscan (ZEISS) and processed with ZEN 3.0 software (ZEISS). ..

    Article Title: Increased excitability of dentate gyrus mossy cells occurs early in life in the Tg2576 model of Alzheimer’s disease
    Article Snippet: .. Photomicrographs were acquired with a Zeiss LSM 880 laser scanning confocal microscope and Zen 3.0 software (Zeiss), with Plan-Apochromat 10×/0.45 M27 and Plan-Apochromat 20×/0.8 M27 objectives. ..

    Article Title: Molecular mechanisms of CAND2 in regulating SCF ubiquitin ligases
    Article Snippet: After removing the blocking buffer, the cells were incubated with primary antibodies (anti-CAND1, Sigma-Aldrich, cat. no. HPA055748, 1 μg/mL; anti-CAND2, Sigma-Aldrich, cat. no. HPA005777, 1 μg/mL) at room temperature for 2 h, washed three times with PBS-T, and incubated with the secondary antibody (Alexa Fluor 488-conjugated anti-rabbit IgG, Thermo Scientific, cat. no. A11008, 4 μg/mL) for 1 h. Coverslips were finally rinsed twice with PBS-T, twice with water, and embedded in the antifade mounting reagent containing DAPI (Invitrogen). .. Images were acquired on a Zeiss LSM 880 laser scanning confocal microscope and processed with ZEN 3.0 software (blue edition, Zeiss). .. SILAC medium was prepared as Arg- and Lys-depleted DMEM (Thermo Scientific) containing 10% dialyzed fetal bovine serum (Cytiva) supplemented with 87 mg/L [ 13 C 6 , 15 N 4 ] L-arginine (Arg10) (Sigma-Aldrich) and 153 mg/L [ 13 C6, 15 N 2 ] l -lysine (Lys8) (Sigma-Aldrich) (“heavy” medium), or the corresponding unlabeled Arg and Lys (Sigma-Aldrich) (“light” medium).

    Immunofluorescence:

    Article Title: Regulation of podocyte surface proteins by the enzyme A Disintegrin And Metalloproteinase 10 (ADAM10).
    Article Snippet: PLAs were performed in 3 μm murine paraffin, or 8 μm 152 human kidney cryo-sections according to the minimally adapted Duo Link® PLA Fluorescence protocol 153 (Sigma-Aldrich). .. Immunofluorescence and PLAs were resolved by confocal microscopy with a 154 LSM800/980 microscope with Airyscan using ZEN 3.0 software (all ZEISS). .. 155 Statistical analyses 156 Jo urn al Pr e-p oo f 7 Statistical analyses were performed using the software GraphPad Prism.

    Confocal Microscopy:

    Article Title: Regulation of podocyte surface proteins by the enzyme A Disintegrin And Metalloproteinase 10 (ADAM10).
    Article Snippet: PLAs were performed in 3 μm murine paraffin, or 8 μm 152 human kidney cryo-sections according to the minimally adapted Duo Link® PLA Fluorescence protocol 153 (Sigma-Aldrich). .. Immunofluorescence and PLAs were resolved by confocal microscopy with a 154 LSM800/980 microscope with Airyscan using ZEN 3.0 software (all ZEISS). .. 155 Statistical analyses 156 Jo urn al Pr e-p oo f 7 Statistical analyses were performed using the software GraphPad Prism.

    Microscopy:

    Article Title: Regulation of podocyte surface proteins by the enzyme A Disintegrin And Metalloproteinase 10 (ADAM10).
    Article Snippet: PLAs were performed in 3 μm murine paraffin, or 8 μm 152 human kidney cryo-sections according to the minimally adapted Duo Link® PLA Fluorescence protocol 153 (Sigma-Aldrich). .. Immunofluorescence and PLAs were resolved by confocal microscopy with a 154 LSM800/980 microscope with Airyscan using ZEN 3.0 software (all ZEISS). .. 155 Statistical analyses 156 Jo urn al Pr e-p oo f 7 Statistical analyses were performed using the software GraphPad Prism.

    Article Title: Increased excitability of dentate gyrus mossy cells occurs early in life in the Tg2576 model of Alzheimer’s disease
    Article Snippet: After this period, slices were washed in TB and exposed to a series of glycerol dilutions (25, 40, 55, 70, 85 and 90%; Sigma-Aldrich), immediately mounted on a 0.1% gelatin-coated slide surrounded by agar (4%) support, coverslipped using a mounting media solution of 0.5% N-propyl gallate (Sigma-Aldrich) and 90% glycerol in ddH 2 O, and the edges were sealed (CoverGrip, Biotium). .. Photomicrographs were acquired with a Zeiss LSM 880 laser scanning confocal microscope and Zen 3.0 software (Zeiss), with Plan-Apochromat 10×/0.45 M27 and Plan-Apochromat 20×/0.8 M27 objectives (Zeiss). ..

    Article Title: Increased excitability of dentate gyrus mossy cells occurs early in life in the Tg2576 model of Alzheimer’s disease
    Article Snippet: .. Photomicrographs were acquired with a Zeiss LSM 880 laser scanning confocal microscope and Zen 3.0 software (Zeiss), with Plan-Apochromat 10×/0.45 M27 and Plan-Apochromat 20×/0.8 M27 objectives. ..

    Article Title: Molecular mechanisms of CAND2 in regulating SCF ubiquitin ligases
    Article Snippet: After removing the blocking buffer, the cells were incubated with primary antibodies (anti-CAND1, Sigma-Aldrich, cat. no. HPA055748, 1 μg/mL; anti-CAND2, Sigma-Aldrich, cat. no. HPA005777, 1 μg/mL) at room temperature for 2 h, washed three times with PBS-T, and incubated with the secondary antibody (Alexa Fluor 488-conjugated anti-rabbit IgG, Thermo Scientific, cat. no. A11008, 4 μg/mL) for 1 h. Coverslips were finally rinsed twice with PBS-T, twice with water, and embedded in the antifade mounting reagent containing DAPI (Invitrogen). .. Images were acquired on a Zeiss LSM 880 laser scanning confocal microscope and processed with ZEN 3.0 software (blue edition, Zeiss). .. SILAC medium was prepared as Arg- and Lys-depleted DMEM (Thermo Scientific) containing 10% dialyzed fetal bovine serum (Cytiva) supplemented with 87 mg/L [ 13 C 6 , 15 N 4 ] L-arginine (Arg10) (Sigma-Aldrich) and 153 mg/L [ 13 C6, 15 N 2 ] l -lysine (Lys8) (Sigma-Aldrich) (“heavy” medium), or the corresponding unlabeled Arg and Lys (Sigma-Aldrich) (“light” medium).

    other:

    Article Title: Molecular mechanisms of CAND2 in regulating SCF ubiquitin ligases.
    Article Snippet: SILACmediumwas prepared asArg- and Lys-depletedDMEM (Thermo Scientific) containing 10% dialyzed fetal bovine serum (Cytiva) supplemented with 87mg/L [13C6, 15N4] L-arginine (Arg10) (Sigma-Aldrich) and 153mg/L [13C6, 15N2] L-lysine (Lys8) (Sigma-Aldrich) (“heavy” medium), or the corresponding unlabeledArg and Lys (Sigma-Aldrich) (“light” medium).



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